DeepPhe Related Software

The DeepPhe Project includes several software products that are not currently integrated with the DeepPhe Translational software.
They are useful for cancer-related tasks and can be dowloaded and run separately. At this time they are kept in the HealthNLP .org repository, along with other code projects by DeepPhe team members. The capabilities of these products will be added to DeepPhe Translational in a future release.

HNLP-TimeNorm

Provides models for finding natural language expressions of dates and times and converting them to a normalized form.

LGT-SACT

Extracts and normalizes temporal information from clinical notes using fine-tuned LLMs. Specifically, Systemic Anticancer Therapy (SACT) Timelines.

ClinGen

Extracts clinical genomic information from clinical notes using LLMs.